J3_7OIF_032

3D structure

PDB id

7OIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-27 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7OIF|1|2|C|48, 7OIF|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OIF_032 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.0867

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OIF|1|2|G|46
7OIF|1|2|C|47
7OIF|1|2|C|48
7OIF|1|2|U|49
7OIF|1|2|A|50
7OIF|1|2|A|51
7OIF|1|2|C|52
*
7OIF|1|2|G|359
7OIF|1|2|G|360
7OIF|1|2|G|361
7OIF|1|2|G|362
7OIF|1|2|A|363
7OIF|1|2|A|364
7OIF|1|2|U|365
7OIF|1|2|A|366
7OIF|1|2|U|367
*
7OIF|1|2|A|393
7OIF|1|2|G|394
7OIF|1|2|C|395

Current chains

Chain 2

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain t

30S ribosomal protein S16