J3_7OII_017

3D structure

PDB id

7OII (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7OII|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OII_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0754

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7OII|1|2|C|826
7OII|1|2|U|827
7OII|1|2|U|828
7OII|1|2|G|829
*
7OII|1|2|C|857
7OII|1|2|G|858
7OII|1|2|G|859
7OII|1|2|A|860
7OII|1|2|G|861
*
7OII|1|2|C|868
7OII|1|2|G|869
7OII|1|2|U|870
7OII|1|2|U|871
7OII|1|2|A|872
7OII|1|2|A|873
7OII|1|2|G|874

Current chains

Chain 2

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21