J3_7OLC_020

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLC_020 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1331

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7OLC|1|2|C|1158
7OLC|1|2|C|1159
7OLC|1|2|A|1160
7OLC|1|2|G|1161
*
7OLC|1|2|C|1577
7OLC|1|2|U|1578
7OLC|1|2|A|1579
7OLC|1|2|G|1580
7OLC|1|2|U|1581
7OLC|1|2|A|1582
7OLC|1|2|A|1583
*
7OLC|1|2|U|1605
7OLC|1|2|G|1606
7OLC|1|2|A|1607
7OLC|1|2|U|1608
7OLC|1|2|U|1609
7OLC|1|2|A|1610
7OLC|1|2|C|1611
7OLC|1|2|G|1612

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SF

40S ribosomal protein s5-like protein

Chain SQ

40S ribosomal protein S16-like protein

Chain Sc

40S ribosomal protein S28-like protein