J3_7OLC_023

3D structure

PDB id

7OLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at idle POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7OLC|1|2|G|1441

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLC_023 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1904

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7OLC|1|2|C|1212
7OLC|1|2|C|1213
7OLC|1|2|A|1214
7OLC|1|2|G|1215
7OLC|1|2|A|1216
7OLC|1|2|C|1217
*
7OLC|1|2|G|1260
7OLC|1|2|G|1261
7OLC|1|2|G|1262
7OLC|1|2|U|1263
7OLC|1|2|G|1264
*
7OLC|1|2|U|1438
7OLC|1|2|U|1439
7OLC|1|2|A|1440
7OLC|1|2|G|1441
7OLC|1|2|A|1442
7OLC|1|2|U|1443
7OLC|1|2|G|1444

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SK

40S ribosomal protein s10-like protein

Chain Sd

uS14

Chain Sf

40S ribosomal protein S27a-like protein