J3_7OLD_010
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CG*CAACU*GG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_010 not in the Motif Atlas
- Geometric match to J3_8C3A_054
- Geometric discrepancy: 0.2037
- The information below is about J3_8C3A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_16991.1
- Basepair signature
- cWW-F-cWW-F-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
7OLD|1|1|C|1611
7OLD|1|1|G|1612
*
7OLD|1|1|C|1621
7OLD|1|1|A|1622
7OLD|1|1|A|1623
7OLD|1|1|C|1624
7OLD|1|1|U|1625
*
7OLD|1|1|G|1790
7OLD|1|1|G|1791
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain LZ
- 60S ribosomal protein L27
- Chain Lg
- Ribosomal protein l34-like protein
- Chain Lk
- 60S ribosomal protein L38-like protein
- Chain Lr
- 60S ribosomal protein L41-A
Coloring options: