J3_7OLD_013
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7OLD|1|1|A|2662, 7OLD|1|1|A|2664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_013 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.1636
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OLD|1|1|C|2623
7OLD|1|1|U|2624
7OLD|1|1|C|2625
*
7OLD|1|1|G|2649
7OLD|1|1|A|2650
7OLD|1|1|A|2651
*
7OLD|1|1|U|2660
7OLD|1|1|A|2661
7OLD|1|1|A|2662
7OLD|1|1|A|2663
7OLD|1|1|A|2664
7OLD|1|1|G|2665
Current chains
- Chain 1
- 26S rRNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain B
- HABP4_PAI-RBP1 domain-containing protein
- Chain LD
- 60S ribosomal protein l5-like protein
- Chain LJ
- Putative ribosomal protein
- Chain LT
- 60S ribosomal protein l21-like protein
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