J3_7OLD_018

3D structure

PDB id

7OLD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAU*AAG*UUGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OLD_018 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1981

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

7OLD|1|2|A|759
7OLD|1|2|G|760
7OLD|1|2|A|761
7OLD|1|2|U|762
*
7OLD|1|2|A|772
7OLD|1|2|A|773
7OLD|1|2|G|774
*
7OLD|1|2|U|783
7OLD|1|2|U|784
7OLD|1|2|G|785
7OLD|1|2|A|786
7OLD|1|2|A|787
7OLD|1|2|U|788

Current chains

Chain 2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4

Chain SJ

40S ribosomal protein s9-like protein

Chain SY

40S ribosomal protein S24