J3_7OLD_021
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGAUUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_021 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1425
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OLD|1|2|C|1158
7OLD|1|2|C|1159
7OLD|1|2|A|1160
7OLD|1|2|G|1161
*
7OLD|1|2|C|1577
7OLD|1|2|U|1578
7OLD|1|2|A|1579
7OLD|1|2|G|1580
7OLD|1|2|U|1581
7OLD|1|2|A|1582
7OLD|1|2|A|1583
*
7OLD|1|2|U|1605
7OLD|1|2|G|1606
7OLD|1|2|A|1607
7OLD|1|2|U|1608
7OLD|1|2|U|1609
7OLD|1|2|A|1610
7OLD|1|2|C|1611
7OLD|1|2|G|1612
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain SF
- 40S ribosomal protein s5-like protein
- Chain SQ
- 40S ribosomal protein S16-like protein
- Chain Sc
- 40S ribosomal protein S28-like protein
Coloring options: