J3_7OLD_024
3D structure
- PDB id
- 7OLD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermophilic eukaryotic 80S ribosome at pe/E (TI)-POST state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7OLD|1|2|A|1214, 7OLD|1|2|G|1441, 7OLD|1|2|U|1443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OLD_024 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1381
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OLD|1|2|C|1212
7OLD|1|2|C|1213
7OLD|1|2|A|1214
7OLD|1|2|G|1215
7OLD|1|2|A|1216
7OLD|1|2|C|1217
*
7OLD|1|2|G|1260
7OLD|1|2|G|1261
7OLD|1|2|G|1262
7OLD|1|2|U|1263
7OLD|1|2|G|1264
*
7OLD|1|2|U|1438
7OLD|1|2|U|1439
7OLD|1|2|A|1440
7OLD|1|2|G|1441
7OLD|1|2|A|1442
7OLD|1|2|U|1443
7OLD|1|2|G|1444
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain C
- Elongation factor 2
- Chain SK
- 40S ribosomal protein s10-like protein
- Chain Sd
- Ribosomal protein uS14
- Chain Sf
- 40S ribosomal protein S27a-like protein
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