J3_7OOD_003

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAGCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

7OOD|1|3|G|721, 7OOD|1|3|G|827, 7OOD|1|3|A|828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_003 not in the Motif Atlas

Homologous match to J3_8VTW_001

Geometric discrepancy: 0.2361

The information below is about J3_8VTW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|U|718
7OOD|1|3|G|719
7OOD|1|3|A|720
7OOD|1|3|G|721
7OOD|1|3|C|722
7OOD|1|3|U|723
7OOD|1|3|A|724
*
7OOD|1|3|U|808
7OOD|1|3|A|809
7OOD|1|3|G|810
*
7OOD|1|3|C|826
7OOD|1|3|G|827
7OOD|1|3|A|828
7OOD|1|3|A|829

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain a

50S ribosomal protein L2

Chain c

50S ribosomal protein L4