J3_7OOD_004

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_004 not in the Motif Atlas

Homologous match to J3_8VTW_002

Geometric discrepancy: 0.1129

The information below is about J3_8VTW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7OOD|1|3|C|733
7OOD|1|3|A|734
7OOD|1|3|G|735
*
7OOD|1|3|C|767
7OOD|1|3|G|768
7OOD|1|3|A|769
7OOD|1|3|A|770
7OOD|1|3|C|771
*
7OOD|1|3|G|795
7OOD|1|3|A|796
7OOD|1|3|U|797
7OOD|1|3|G|798

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2