J3_7OOD_005

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_005 not in the Motif Atlas

Homologous match to J3_8VTW_003

Geometric discrepancy: 0.3202

The information below is about J3_8VTW_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7OOD|1|3|G|1090
7OOD|1|3|G|1091
7OOD|1|3|A|1092
*
7OOD|1|3|U|1116
7OOD|1|3|U|1117
7OOD|1|3|U|1118
7OOD|1|3|A|1119
7OOD|1|3|A|1120
7OOD|1|3|A|1121
7OOD|1|3|G|1122
*
7OOD|1|3|C|1137
7OOD|1|3|A|1138
7OOD|1|3|C|1139

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L36

Chain g

50S ribosomal protein L10

Chain h

50S ribosomal protein L11