J3_7OOD_008

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_008 not in the Motif Atlas

Homologous match to J3_7A0S_018

Geometric discrepancy: 0.15

The information below is about J3_7A0S_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_94309.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

9

Unit IDs

7OOD|1|3|U|1372
7OOD|1|3|C|1373
7OOD|1|3|U|1374
7OOD|1|3|G|1375
7OOD|1|3|G|1376
7OOD|1|3|A|1377
7OOD|1|3|C|1378
*
7OOD|1|3|G|1409
7OOD|1|3|A|1410
7OOD|1|3|C|1411
7OOD|1|3|A|1412
7OOD|1|3|A|1413
*
7OOD|1|3|U|1430
7OOD|1|3|A|1431

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L23

Chain w

50S ribosomal protein L29