J3_7OOD_010

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUG*CUAAU*AGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_010 not in the Motif Atlas

Homologous match to J3_8VTW_006

Geometric discrepancy: 0.1616

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7OOD|1|3|U|2098
7OOD|1|3|U|2099
7OOD|1|3|G|2100
*
7OOD|1|3|C|2204
7OOD|1|3|U|2205
7OOD|1|3|A|2206
7OOD|1|3|A|2207
7OOD|1|3|U|2208
*
7OOD|1|3|A|2231
7OOD|1|3|G|2232
7OOD|1|3|A|2233
7OOD|1|3|C|2234
7OOD|1|3|A|2235
7OOD|1|3|G|2236

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L2

Chain f

50S ribosomal protein L9

Chain v

50S ribosomal protein L28