J3_7OOD_012

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

7OOD|1|3|A|2526, 7OOD|1|3|U|2527

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_012 not in the Motif Atlas

Homologous match to J3_8VTW_008

Geometric discrepancy: 0.1505

The information below is about J3_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.4

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

7OOD|1|3|C|2525
7OOD|1|3|A|2526
7OOD|1|3|U|2527
7OOD|1|3|C|2528
*
7OOD|1|3|G|2553
7OOD|1|3|U|2554
7OOD|1|3|U|2555
*
7OOD|1|3|A|2569
7OOD|1|3|U|2570
7OOD|1|3|U|2571
7OOD|1|3|A|2572
7OOD|1|3|A|2573
7OOD|1|3|A|2574
7OOD|1|3|G|2575

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L3

Chain j

50S ribosomal protein L14