J3_7OOD_017

3D structure

PDB id

7OOD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mycoplasma pneumoniae 50S subunit of ribosomes in chloramphenicol-treated cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUG*CGAUAGCGAAACAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

7OOD|1|3|U|36, 7OOD|1|3|U|484, 7OOD|1|3|C|492

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OOD_017 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1284

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

7OOD|1|3|C|34
7OOD|1|3|U|35
7OOD|1|3|U|36
7OOD|1|3|G|37
*
7OOD|1|3|C|481
7OOD|1|3|G|482
7OOD|1|3|A|483
7OOD|1|3|U|484
7OOD|1|3|A|485
7OOD|1|3|G|486
7OOD|1|3|C|487
7OOD|1|3|G|488
7OOD|1|3|A|489
7OOD|1|3|A|490
7OOD|1|3|A|491
7OOD|1|3|C|492
7OOD|1|3|A|493
7OOD|1|3|G|494
7OOD|1|3|U|495
7OOD|1|3|A|496
7OOD|1|3|C|497
*
7OOD|1|3|G|504
7OOD|1|3|G|505
7OOD|1|3|A|506
7OOD|1|3|A|507
7OOD|1|3|A|508
7OOD|1|3|G|509

Current chains

Chain 3

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L34

Chain c

50S ribosomal protein L4

Chain p

50S ribosomal protein L20

Chain s

50S ribosomal protein L23