J3_7OPE_015
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GC*GUGAAAAGCAC*GAGUGAAAGAGAUCC
- Length
- 28 nucleotides
- Bulged bases
- 7OPE|1|A|G|550, 7OPE|1|A|U|554
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OPE_015 not in the Motif Atlas
- Homologous match to J3_4WF9_011
- Geometric discrepancy: 0.2182
- The information below is about J3_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
7OPE|1|A|G|30
7OPE|1|A|C|31
*
7OPE|1|A|G|521
7OPE|1|A|U|522
7OPE|1|A|G|523
7OPE|1|A|A|524
7OPE|1|A|A|525
7OPE|1|A|A|526
7OPE|1|A|A|527
7OPE|1|A|G|528
7OPE|1|A|C|529
7OPE|1|A|A|530
7OPE|1|A|C|531
*
7OPE|1|A|G|542
7OPE|1|A|A|543
7OPE|1|A|G|544
7OPE|1|A|U|545
7OPE|1|A|G|546
7OPE|1|A|A|547
7OPE|1|A|A|548
7OPE|1|A|A|549
7OPE|1|A|G|550
7OPE|1|A|A|551
7OPE|1|A|G|552
7OPE|1|A|A|553
7OPE|1|A|U|554
7OPE|1|A|C|555
7OPE|1|A|C|556
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain U
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L22
- Chain Y
- 50S ribosomal protein L24
Coloring options: