J3_7OPE_016
3D structure
- PDB id
- 7OPE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RqcH DR variant bound to 50S-peptidyl-tRNA-RqcP RQC complex (rigid body refinement)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7OPE|1|A|U|495, 7OPE|1|A|C|503
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OPE_016 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.103
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7OPE|1|A|C|32
7OPE|1|A|U|33
7OPE|1|A|U|34
7OPE|1|A|G|35
*
7OPE|1|A|C|492
7OPE|1|A|G|493
7OPE|1|A|A|494
7OPE|1|A|U|495
7OPE|1|A|A|496
7OPE|1|A|G|497
7OPE|1|A|U|498
7OPE|1|A|G|499
7OPE|1|A|A|500
7OPE|1|A|A|501
7OPE|1|A|C|502
7OPE|1|A|C|503
7OPE|1|A|A|504
7OPE|1|A|G|505
7OPE|1|A|U|506
7OPE|1|A|A|507
7OPE|1|A|C|508
*
7OPE|1|A|G|515
7OPE|1|A|G|516
7OPE|1|A|A|517
7OPE|1|A|A|518
7OPE|1|A|A|519
7OPE|1|A|G|520
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L4
- Chain U
- 50S ribosomal protein L20
- Chain X
- 50S ribosomal protein L23
- Chain h
- 50S ribosomal protein L34
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