J3_7OSA_013
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 7OSA|1|25S|U|117, 7OSA|1|25S|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSA_013 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.1126
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_19664.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OSA|1|25S|C|113
7OSA|1|25S|A|114
7OSA|1|25S|A|115
7OSA|1|25S|A|116
7OSA|1|25S|U|117
7OSA|1|25S|U|118
7OSA|1|25S|U|119
7OSA|1|25S|G|120
7OSA|1|25S|A|121
7OSA|1|25S|A|122
7OSA|1|25S|A|123
*
7OSA|1|25S|U|149
7OSA|1|25S|A|150
7OSA|1|25S|A|151
7OSA|1|25S|U|152
7OSA|1|25S|U|153
7OSA|1|25S|U|154
7OSA|1|25S|G|155
7OSA|1|25S|G|156
7OSA|1|25S|A|157
7OSA|1|25S|G|158
*
7OSA|1|25S|C|263
7OSA|1|25S|G|264
7OSA|1|25S|A|265
7OSA|1|25S|A|266
7OSA|1|25S|G|267
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL13
- 60S ribosomal protein L13
- Chain eL15
- 60S ribosomal protein L15-A
- Chain eL36
- 60S ribosomal protein L36-A
- Chain eL8
- 60S ribosomal protein L8-A
- Chain uL29
- BJ4_G0044250.mRNA.1.CDS.1
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