J3_7OSA_014
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AUGAAAAG*CG*CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSA_014 not in the Motif Atlas
- Geometric match to J3_5TBW_002
- Geometric discrepancy: 0.0806
- The information below is about J3_5TBW_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69021.1
- Basepair signature
- cWW-tWH-cWW-tSH-F-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
7OSA|1|25S|A|369
7OSA|1|25S|U|370
7OSA|1|25S|G|371
7OSA|1|25S|A|372
7OSA|1|25S|A|373
7OSA|1|25S|A|374
7OSA|1|25S|A|375
7OSA|1|25S|G|376
*
7OSA|1|25S|C|403
7OSA|1|25S|G|404
*
7OSA|1|58S|C|19
7OSA|1|58S|U|20
Current chains
- Chain 25S
- 25S rRNA
- Chain 58S
- 5.8S rRNA
Nearby chains
- Chain eL39
- 60S ribosomal protein L39
- Chain uL22
- BJ4_G0005750.mRNA.1.CDS.1
- Chain uL24
- 60S ribosomal protein L26-A
- Chain uL4
- BJ4_G0008850.mRNA.1.CDS.1
Coloring options: