J3_7OSA_017

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSA_017 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1095

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

7OSA|1|25S|U|829
7OSA|1|25S|A|830
7OSA|1|25S|G|831
*
7OSA|1|25S|C|863
7OSA|1|25S|G|864
7OSA|1|25S|U|865
7OSA|1|25S|A|866
7OSA|1|25S|G|867
*
7OSA|1|25S|U|892
7OSA|1|25S|C|893
7OSA|1|25S|G|894
7OSA|1|25S|A|895

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL34

60S ribosomal protein L34-A

Chain uL2

60S ribosomal protein L2-B