J3_7OSA_029
3D structure
- PDB id
- 7OSA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 7OSA|1|18S|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSA_029 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0526
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7OSA|1|18S|A|41
7OSA|1|18S|G|42
7OSA|1|18S|A|43
7OSA|1|18S|U|44
7OSA|1|18S|U|45
7OSA|1|18S|A|46
7OSA|1|18S|A|47
7OSA|1|18S|G|48
*
7OSA|1|18S|C|431
7OSA|1|18S|G|432
7OSA|1|18S|C|433
7OSA|1|18S|G|434
7OSA|1|18S|C|435
7OSA|1|18S|A|436
7OSA|1|18S|A|437
7OSA|1|18S|A|438
7OSA|1|18S|U|439
*
7OSA|1|18S|A|464
7OSA|1|18S|G|465
7OSA|1|18S|U|466
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eEF2
- Elongation factor 2
- Chain uS12
- 40S ribosomal protein S23
- Chain uS4
- BJ4_G0026100.mRNA.1.CDS.1
Coloring options: