J3_7OSA_036

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UU*AGAAGU*ACAUUUGA

Length

16 nucleotides

Bulged bases

7OSA|1|25S|A|1065, 7OSA|1|25S|A|1093, 7OSA|1|25S|U|1094, 7OSA|1|25S|U|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSA_036 not in the Motif Atlas

Geometric match to J3_5TBW_063

Geometric discrepancy: 0.2518

The information below is about J3_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_11066.2

Basepair signature

cWW-cWW-cSS-F-cWW-F-F-cWW-F

Number of instances in this motif group

3

Unit IDs

7OSA|1|25S|U|986
7OSA|1|25S|U|987
*
7OSA|1|25S|A|1062
7OSA|1|25S|G|1063
7OSA|1|25S|A|1064
7OSA|1|25S|A|1065
7OSA|1|25S|G|1066
7OSA|1|25S|U|1067
*
7OSA|1|25S|A|1091
7OSA|1|25S|C|1092
7OSA|1|25S|A|1093
7OSA|1|25S|U|1094
7OSA|1|25S|U|1095
7OSA|1|25S|U|1096
7OSA|1|25S|G|1097
7OSA|1|25S|A|1098

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL21

BJ4_G0003770.mRNA.1.CDS.1

Chain eL29

60S ribosomal protein L29

Chain uL30

60S ribosomal protein L7-A