J3_7OSA_039

3D structure

PDB id

7OSA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSA_039 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0846

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7OSA|1|25S|A|1654
7OSA|1|25S|G|1655
7OSA|1|25S|A|1656
7OSA|1|25S|C|1657
7OSA|1|25S|G|1658
*
7OSA|1|25S|C|1791
7OSA|1|25S|C|1792
*
7OSA|1|25S|G|1796
7OSA|1|25S|A|1797
7OSA|1|25S|A|1798
7OSA|1|25S|A|1799
7OSA|1|25S|A|1800
7OSA|1|25S|U|1801

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL34

60S ribosomal protein L34-A

Chain eL43

60S ribosomal protein L43-A

Chain uL2

60S ribosomal protein L2-B