J3_7OSM_001
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AG*CGCAAAU*AGU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_001 not in the Motif Atlas
- Geometric match to J3_8C3A_082
- Geometric discrepancy: 0.0713
- The information below is about J3_8C3A_082
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.2
- Basepair signature
- cWW-F-cWW-F-F-cSW-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
7OSM|1|18S|A|41
7OSM|1|18S|G|42
*
7OSM|1|18S|C|433
7OSM|1|18S|G|434
7OSM|1|18S|C|435
7OSM|1|18S|A|436
7OSM|1|18S|A|437
7OSM|1|18S|A|438
7OSM|1|18S|U|439
*
7OSM|1|18S|A|464
7OSM|1|18S|G|465
7OSM|1|18S|U|466
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eEF2
- Elongation factor 2
- Chain uS12
- 40S ribosomal protein S23
- Chain uS4
- BJ4_G0026100.mRNA.1.CDS.1
Coloring options: