J3_7OSM_010
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 7OSM|1|18S|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_010 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1155
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7OSM|1|18S|U|1283
7OSM|1|18S|C|1284
7OSM|1|18S|U|1285
7OSM|1|18S|U|1286
7OSM|1|18S|A|1287
7OSM|1|18S|G|1288
*
7OSM|1|18S|C|1327
7OSM|1|18S|G|1328
7OSM|1|18S|A|1329
7OSM|1|18S|G|1330
7OSM|1|18S|A|1331
7OSM|1|18S|C|1332
*
7OSM|1|18S|G|1419
7OSM|1|18S|C|1420
7OSM|1|18S|A|1421
7OSM|1|18S|A|1422
7OSM|1|18S|U|1423
7OSM|1|18S|A|1424
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain eS17
- BJ4_G0020710.mRNA.1.CDS.1
- Chain uS10
- 40S ribosomal protein S20
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS3
- BJ4_G0045400.mRNA.1.CDS.1
- Chain uS5
- 40S ribosomal protein S2
- Chain uS9
- BJ4_G0008010.mRNA.1.CDS.1
Coloring options: