3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
7OSM|1|18S|U|1285
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OSM_010 not in the Motif Atlas
Homologous match to J3_4V88_039
Geometric discrepancy: 0.1155
The information below is about J3_4V88_039
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_47248.1
Basepair signature
cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
Number of instances in this motif group
1

Unit IDs

7OSM|1|18S|U|1283
7OSM|1|18S|C|1284
7OSM|1|18S|U|1285
7OSM|1|18S|U|1286
7OSM|1|18S|A|1287
7OSM|1|18S|G|1288
*
7OSM|1|18S|C|1327
7OSM|1|18S|G|1328
7OSM|1|18S|A|1329
7OSM|1|18S|G|1330
7OSM|1|18S|A|1331
7OSM|1|18S|C|1332
*
7OSM|1|18S|G|1419
7OSM|1|18S|C|1420
7OSM|1|18S|A|1421
7OSM|1|18S|A|1422
7OSM|1|18S|U|1423
7OSM|1|18S|A|1424

Current chains

Chain 18S
18S rRNA

Nearby chains

Chain eS17
BJ4_G0020710.mRNA.1.CDS.1
Chain uS10
40S ribosomal protein S20
Chain uS14
HLJ1_G0030400.mRNA.1.CDS.1
Chain uS3
BJ4_G0045400.mRNA.1.CDS.1
Chain uS5
40S ribosomal protein S2
Chain uS9
BJ4_G0008010.mRNA.1.CDS.1

Coloring options:


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