J3_7OSM_011

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_011 not in the Motif Atlas

Homologous match to J3_8C3A_085

Geometric discrepancy: 0.1114

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7OSM|1|18S|U|1293
7OSM|1|18S|G|1294
*
7OSM|1|18S|U|1303
7OSM|1|18S|G|1304
7OSM|1|18S|U|1305
7OSM|1|18S|C|1306
*
7OSM|1|18S|G|1318
7OSM|1|18S|A|1319
7OSM|1|18S|U|1320
7OSM|1|18S|A|1321
7OSM|1|18S|A|1322

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eS17

BJ4_G0020710.mRNA.1.CDS.1

Chain uS2

40S ribosomal protein S0

Chain uS5

40S ribosomal protein S2