J3_7OSM_014
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 7OSM|1|25S|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_014 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.1061
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7OSM|1|25S|C|113
7OSM|1|25S|A|114
7OSM|1|25S|A|115
7OSM|1|25S|A|116
7OSM|1|25S|U|117
7OSM|1|25S|U|118
7OSM|1|25S|U|119
7OSM|1|25S|G|120
7OSM|1|25S|A|121
7OSM|1|25S|A|122
7OSM|1|25S|A|123
*
7OSM|1|25S|U|149
7OSM|1|25S|A|150
7OSM|1|25S|A|151
7OSM|1|25S|U|152
7OSM|1|25S|U|153
7OSM|1|25S|U|154
7OSM|1|25S|G|155
7OSM|1|25S|G|156
7OSM|1|25S|A|157
7OSM|1|25S|G|158
*
7OSM|1|25S|C|263
7OSM|1|25S|G|264
7OSM|1|25S|A|265
7OSM|1|25S|A|266
7OSM|1|25S|G|267
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL13
- 60S ribosomal protein L13
- Chain eL15
- 60S ribosomal protein L15-A
- Chain eL36
- 60S ribosomal protein L36-A
- Chain eL8
- 60S ribosomal protein L8-A
- Chain uL29
- BJ4_G0044250.mRNA.1.CDS.1
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