3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
7OSM|1|25S|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OSM_016 not in the Motif Atlas
Homologous match to J3_5TBW_003
Geometric discrepancy: 0.1449
The information below is about J3_5TBW_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_15033.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
Number of instances in this motif group
2

Unit IDs

7OSM|1|25S|U|502
7OSM|1|25S|C|503
*
7OSM|1|25S|G|588
7OSM|1|25S|A|589
7OSM|1|25S|G|590
7OSM|1|25S|G|591
7OSM|1|25S|A|592
7OSM|1|25S|C|593
7OSM|1|25S|U|594
7OSM|1|25S|G|595
7OSM|1|25S|C|596
7OSM|1|25S|G|597
*
7OSM|1|25S|C|606
7OSM|1|25S|A|607
7OSM|1|25S|A|608
7OSM|1|25S|G|609
7OSM|1|25S|G|610
7OSM|1|25S|A|611

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL32
HN1_G0013350.mRNA.1.CDS.1
Chain eL6
60S ribosomal protein L6
Chain uL30
60S ribosomal protein L7-A
Chain uL4
BJ4_G0008850.mRNA.1.CDS.1

Coloring options:


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