J3_7OSM_016
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 7OSM|1|25S|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_016 not in the Motif Atlas
- Homologous match to J3_5TBW_003
- Geometric discrepancy: 0.1449
- The information below is about J3_5TBW_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_15033.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-F-cWS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OSM|1|25S|U|502
7OSM|1|25S|C|503
*
7OSM|1|25S|G|588
7OSM|1|25S|A|589
7OSM|1|25S|G|590
7OSM|1|25S|G|591
7OSM|1|25S|A|592
7OSM|1|25S|C|593
7OSM|1|25S|U|594
7OSM|1|25S|G|595
7OSM|1|25S|C|596
7OSM|1|25S|G|597
*
7OSM|1|25S|C|606
7OSM|1|25S|A|607
7OSM|1|25S|A|608
7OSM|1|25S|G|609
7OSM|1|25S|G|610
7OSM|1|25S|A|611
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL32
- HN1_G0013350.mRNA.1.CDS.1
- Chain eL6
- 60S ribosomal protein L6
- Chain uL30
- 60S ribosomal protein L7-A
- Chain uL4
- BJ4_G0008850.mRNA.1.CDS.1
Coloring options: