J3_7OSM_018
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_018 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.126
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7OSM|1|25S|U|829
7OSM|1|25S|A|830
7OSM|1|25S|G|831
*
7OSM|1|25S|C|863
7OSM|1|25S|G|864
7OSM|1|25S|U|865
7OSM|1|25S|A|866
7OSM|1|25S|G|867
*
7OSM|1|25S|U|892
7OSM|1|25S|C|893
7OSM|1|25S|G|894
7OSM|1|25S|A|895
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain eL19
- 60S ribosomal protein L19-A
- Chain eL34
- 60S ribosomal protein L34-A
- Chain eL43
- 60S ribosomal protein L43-A
- Chain uL2
- 60S ribosomal protein L2-B
Coloring options: