J3_7OSM_020

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

7OSM|1|25S|A|1259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_020 not in the Motif Atlas

Homologous match to J3_8C3A_005

Geometric discrepancy: 0.2438

The information below is about J3_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

7OSM|1|25S|G|1230
7OSM|1|25S|A|1231
7OSM|1|25S|C|1232
*
7OSM|1|25S|G|1256
7OSM|1|25S|C|1257
7OSM|1|25S|U|1258
7OSM|1|25S|A|1259
7OSM|1|25S|A|1260
7OSM|1|25S|G|1261
7OSM|1|25S|G|1262
*
7OSM|1|25S|C|1277
7OSM|1|25S|A|1278
7OSM|1|25S|C|1279

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain uL10

60S acidic ribosomal protein P0

Chain uL11

60S ribosomal protein L12-B