J3_7OSM_021

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

7OSM|1|25S|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_021 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.0689

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

7OSM|1|25S|U|1479
7OSM|1|25S|G|1480
7OSM|1|25S|A|1481
7OSM|1|25S|A|1482
7OSM|1|25S|G|1483
7OSM|1|25S|U|1484
7OSM|1|25S|G|1485
*
7OSM|1|25S|C|1857
7OSM|1|25S|A|1858
7OSM|1|25S|A|1859
*
7OSM|1|25S|U|1871
7OSM|1|25S|C|1872
7OSM|1|25S|U|1873
7OSM|1|25S|A|1874

Current chains

Chain 25S

25S rRNA

Nearby chains

Chain eL19

60S ribosomal protein L19-A

Chain eL34

60S ribosomal protein L34-A