J3_7OSM_023
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_023 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1167
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
7OSM|1|25S|U|1526
7OSM|1|25S|C|1527
7OSM|1|25S|G|1528
7OSM|1|25S|A|1529
7OSM|1|25S|U|1530
7OSM|1|25S|C|1531
*
7OSM|1|25S|G|1591
7OSM|1|25S|G|1592
7OSM|1|25S|A|1593
7OSM|1|25S|A|1594
7OSM|1|25S|U|1595
*
7OSM|1|25S|A|1612
7OSM|1|25S|A|1613
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain 58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain eL34
- 60S ribosomal protein L34-A
- Chain eL38
- BJ4_G0032190.mRNA.1.CDS.1
- Chain eL39
- 60S ribosomal protein L39
- Chain uL23
- 60S ribosomal protein L25
Coloring options: