J3_7OSM_029

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AC*GAUACGU*AAUCU

Length

14 nucleotides

Bulged bases

7OSM|1|58S|C|62

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_029 not in the Motif Atlas

Geometric match to J3_5TBW_071

Geometric discrepancy: 0.1179

The information below is about J3_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38265.2

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F

Number of instances in this motif group

8

Unit IDs

7OSM|1|58S|A|44
7OSM|1|58S|C|45
*
7OSM|1|58S|G|58
7OSM|1|58S|A|59
7OSM|1|58S|U|60
7OSM|1|58S|A|61
7OSM|1|58S|C|62
7OSM|1|58S|G|63
7OSM|1|58S|U|64
*
7OSM|1|58S|A|96
7OSM|1|58S|A|97
7OSM|1|58S|U|98
7OSM|1|58S|C|99
7OSM|1|58S|U|100

Current chains

Chain 58S

5.8S rRNA

Nearby chains

Chain eL37

Ribosomal protein L37

Chain eL39

60S ribosomal protein L39

Chain uL23

60S ribosomal protein L25

Chain uL29

BJ4_G0044250.mRNA.1.CDS.1