J3_7OSM_031

3D structure

PDB id

7OSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7OSM|1|18S|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OSM_031 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.0635

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OSM|1|18S|A|41
7OSM|1|18S|G|42
7OSM|1|18S|A|43
7OSM|1|18S|U|44
7OSM|1|18S|U|45
7OSM|1|18S|A|46
7OSM|1|18S|A|47
7OSM|1|18S|G|48
*
7OSM|1|18S|C|431
7OSM|1|18S|G|432
7OSM|1|18S|C|433
7OSM|1|18S|G|434
7OSM|1|18S|C|435
7OSM|1|18S|A|436
7OSM|1|18S|A|437
7OSM|1|18S|A|438
7OSM|1|18S|U|439
*
7OSM|1|18S|A|464
7OSM|1|18S|G|465
7OSM|1|18S|U|466

Current chains

Chain 18S

18S rRNA

Nearby chains

Chain eEF2

Elongation factor 2

Chain uS12

40S ribosomal protein S23

Chain uS4

BJ4_G0026100.mRNA.1.CDS.1