J3_7OSM_041
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 7OSM|1|25S|U|343, 7OSM|1|25S|A|351, 7OSM|1|58S|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_041 not in the Motif Atlas
- Homologous match to J3_8C3A_047
- Geometric discrepancy: 0.0736
- The information below is about J3_8C3A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_24554.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 7
Unit IDs
7OSM|1|25S|C|340
7OSM|1|25S|G|341
7OSM|1|25S|A|342
7OSM|1|25S|U|343
7OSM|1|25S|A|344
7OSM|1|25S|G|345
7OSM|1|25S|C|346
7OSM|1|25S|G|347
7OSM|1|25S|A|348
7OSM|1|25S|A|349
7OSM|1|25S|C|350
7OSM|1|25S|A|351
7OSM|1|25S|A|352
7OSM|1|25S|G|353
7OSM|1|25S|U|354
7OSM|1|25S|A|355
7OSM|1|25S|C|356
*
7OSM|1|25S|G|363
7OSM|1|25S|G|364
7OSM|1|25S|A|365
7OSM|1|25S|A|366
7OSM|1|25S|A|367
7OSM|1|25S|G|368
*
7OSM|1|58S|C|21
7OSM|1|58S|U|22
7OSM|1|58S|U|23
7OSM|1|58S|G|24
Current chains
- Chain 25S
- 25S rRNA
- Chain 58S
- 5.8S rRNA
Nearby chains
- Chain eL37
- Ribosomal protein L37
- Chain eL39
- 60S ribosomal protein L39
- Chain uL24
- 60S ribosomal protein L26-A
- Chain uL4
- BJ4_G0008850.mRNA.1.CDS.1
Coloring options: