3D structure

PDB id
7OSM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AGACG*CC*GAAAAU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7OSM_045 not in the Motif Atlas
Homologous match to J3_8P9A_058
Geometric discrepancy: 0.0724
The information below is about J3_8P9A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_12393.2
Basepair signature
cWW-tSH-tHH-F-F-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

7OSM|1|25S|A|1654
7OSM|1|25S|G|1655
7OSM|1|25S|A|1656
7OSM|1|25S|C|1657
7OSM|1|25S|G|1658
*
7OSM|1|25S|C|1791
7OSM|1|25S|C|1792
*
7OSM|1|25S|G|1796
7OSM|1|25S|A|1797
7OSM|1|25S|A|1798
7OSM|1|25S|A|1799
7OSM|1|25S|A|1800
7OSM|1|25S|U|1801

Current chains

Chain 25S
25S rRNA

Nearby chains

Chain eL34
60S ribosomal protein L34-A
Chain eL43
60S ribosomal protein L43-A
Chain uL2
60S ribosomal protein L2-B

Coloring options:


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