J3_7OSM_047
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 7OSM|1|25S|C|2760, 7OSM|1|25S|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_047 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0738
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7OSM|1|25S|G|2651
7OSM|1|25S|U|2652
7OSM|1|25S|C|2653
*
7OSM|1|25S|G|2754
7OSM|1|25S|C|2755
7OSM|1|25S|C|2756
7OSM|1|25S|U|2757
7OSM|1|25S|A|2758
7OSM|1|25S|U|2759
7OSM|1|25S|C|2760
7OSM|1|25S|G|2761
7OSM|1|25S|A|2762
7OSM|1|25S|U|2763
7OSM|1|25S|C|2764
7OSM|1|25S|C|2765
*
7OSM|1|25S|G|2793
7OSM|1|25S|G|2794
7OSM|1|25S|U|2795
7OSM|1|25S|G|2796
7OSM|1|25S|C|2797
7OSM|1|25S|C|2798
Current chains
- Chain 25S
- 25S rRNA
Nearby chains
- Chain PSIT
- Transfer RNA; tRNA
- Chain eL18
- BJ4_G0033900.mRNA.1.CDS.1
- Chain eL21
- BJ4_G0003770.mRNA.1.CDS.1
- Chain eL42
- BJ4_G0001880.mRNA.1.CDS.1
- Chain uL15
- 60S ribosomal protein L28
Coloring options: