J3_7OSM_053
3D structure
- PDB id
- 7OSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Intermediate translocation complex of 80 S.cerevisiae ribosome with eEF2 and ligands
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AAC*GGACUA*UGGAAGUUU
- Length
- 18 nucleotides
- Bulged bases
- 7OSM|1|18S|U|1390, 7OSM|1|18S|U|1413, 7OSM|1|18S|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OSM_053 not in the Motif Atlas
- Homologous match to J3_8C3A_086
- Geometric discrepancy: 0.231
- The information below is about J3_8C3A_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_80847.1
- Basepair signature
- cWW-tWH-F-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7OSM|1|18S|A|1336
7OSM|1|18S|A|1337
7OSM|1|18S|C|1338
*
7OSM|1|18S|G|1386
7OSM|1|18S|G|1387
7OSM|1|18S|A|1388
7OSM|1|18S|C|1389
7OSM|1|18S|U|1390
7OSM|1|18S|A|1391
*
7OSM|1|18S|U|1407
7OSM|1|18S|G|1408
7OSM|1|18S|G|1409
7OSM|1|18S|A|1410
7OSM|1|18S|A|1411
7OSM|1|18S|G|1412
7OSM|1|18S|U|1413
7OSM|1|18S|U|1414
7OSM|1|18S|U|1415
Current chains
- Chain 18S
- 18S rRNA
Nearby chains
- Chain RACK
- BJ4_G0022010.mRNA.1.CDS.1
- Chain eS17
- BJ4_G0020710.mRNA.1.CDS.1
- Chain uS10
- 40S ribosomal protein S20
- Chain uS14
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain uS7
- Rps5p
- Chain uS9
- BJ4_G0008010.mRNA.1.CDS.1
Coloring options: