J3_7OT5_017

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7OT5|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OT5_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.07

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7OT5|1|2|C|826
7OT5|1|2|U|827
7OT5|1|2|U|828
7OT5|1|2|G|829
*
7OT5|1|2|C|857
7OT5|1|2|G|858
7OT5|1|2|G|859
7OT5|1|2|A|860
7OT5|1|2|G|861
*
7OT5|1|2|C|868
7OT5|1|2|G|869
7OT5|1|2|U|870
7OT5|1|2|U|871
7OT5|1|2|A|872
7OT5|1|2|A|873
7OT5|1|2|G|874

Current chains

Chain 2

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain l

30S ribosomal protein S8

Chain y

30S ribosomal protein S21