J3_7OT5_026

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7OT5|1|2|U|1240, 7OT5|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OT5_026 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1294

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

7OT5|1|2|C|1237
7OT5|1|2|A|1238
7OT5|1|2|A|1239
7OT5|1|2|U|1240
7OT5|1|2|G|1241
*
7OT5|1|2|C|1296
7OT5|1|2|G|1297
7OT5|1|2|U|1298
7OT5|1|2|A|1299
7OT5|1|2|G|1300
7OT5|1|2|U|1301
7OT5|1|2|C|1302
7OT5|1|2|C|1303
*
7OT5|1|2|G|1334
7OT5|1|2|U|1335
7OT5|1|2|C|1336
7OT5|1|2|G|1337

Current chains

Chain 2

16S rRNA

Nearby chains

Chain k

30S ribosomal protein S7

Chain q

30S ribosomal protein S13