J3_7OT5_033

3D structure

PDB id

7OT5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CspA-70 cotranslational folding intermediate 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7OT5|1|2|C|48, 7OT5|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OT5_033 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.079

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7OT5|1|2|G|46
7OT5|1|2|C|47
7OT5|1|2|C|48
7OT5|1|2|U|49
7OT5|1|2|A|50
7OT5|1|2|A|51
7OT5|1|2|C|52
*
7OT5|1|2|G|359
7OT5|1|2|G|360
7OT5|1|2|G|361
7OT5|1|2|G|362
7OT5|1|2|A|363
7OT5|1|2|A|364
7OT5|1|2|U|365
7OT5|1|2|A|366
7OT5|1|2|U|367
*
7OT5|1|2|A|393
7OT5|1|2|G|394
7OT5|1|2|C|395

Current chains

Chain 2

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S12

Chain t

30S ribosomal protein S16