J3_7OW7_012

3D structure

PDB id

7OW7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

EIF6-bound large subunit of the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OW7_012 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.127

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7OW7|1|A|C|3937
7OW7|1|A|G|3938
7OW7|1|A|G|3939
*
7OW7|1|A|C|4074
7OW7|1|A|U|4075
7OW7|1|A|G|4076
7OW7|1|A|A|4077
7OW7|1|A|C|4078
*
7OW7|1|A|G|4168
7OW7|1|A|G|4169
7OW7|1|A|A|4170
7OW7|1|A|C|4171
7OW7|1|A|A|4172
7OW7|1|A|G|4173

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain n

60S ribosomal protein L7a

Chain t

60S ribosomal protein L15