J3_7OYD_005
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCAG*CG(PSU)AG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 7OYD|1|5|A|1617
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_005 not in the Motif Atlas
- Homologous match to J3_8P9A_050
- Geometric discrepancy: 0.2376
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
7OYD|1|5|G|1549
7OYD|1|5|C|1550
7OYD|1|5|A|1551
7OYD|1|5|G|1552
*
7OYD|1|5|C|1584
7OYD|1|5|G|1585
7OYD|1|5|PSU|1586
7OYD|1|5|A|1587
7OYD|1|5|G|1588
*
7OYD|1|5|U|1613
7OYD|1|5|C|1614
7OYD|1|5|C|1615
7OYD|1|5|G|1616
7OYD|1|5|A|1617
7OYD|1|5|C|1618
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
- Chain p
- eL43
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