J3_7OYD_008
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 7OYD|1|5|A|2400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_008 not in the Motif Atlas
- Homologous match to J3_8C3A_006
- Geometric discrepancy: 0.0842
- The information below is about J3_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_10154.2
- Basepair signature
- cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F
- Number of instances in this motif group
- 3
Unit IDs
7OYD|1|5|C|2397
7OYD|1|5|G|2398
7OYD|1|5|A|2399
7OYD|1|5|A|2400
7OYD|1|5|G|2401
7OYD|1|5|U|2402
7OYD|1|5|G|2403
*
7OYD|1|5|C|2809
7OYD|1|5|A|2810
7OYD|1|5|A|2811
*
7OYD|1|5|U|2823
7OYD|1|5|C|2824
7OYD|1|5|U|2825
7OYD|1|5|G|2826
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19
- Chain g
- 60S ribosomal protein L34
Coloring options: