J3_7OYD_016
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7OYD|1|5|A|4284
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_016 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.105
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|C|4245
7OYD|1|5|U|4246
7OYD|1|5|C|4247
*
7OYD|1|5|G|4271
7OYD|1|5|A|4272
7OYD|1|5|G|4273
*
7OYD|1|5|C|4282
7OYD|1|5|A|4283
7OYD|1|5|A|4284
7OYD|1|5|A|4285
7OYD|1|5|A|4286
7OYD|1|5|G|4287
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain J
- Ribosomal protein L11
- Chain K
- 5S ribosomal RNA; 5S rRNA
- Chain T
- eL21
- Chain o
- RPL36A
Coloring options: