J3_7OYD_020

3D structure

PDB id

7OYD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

7OYD|1|9|C|483

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7OYD_020 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1032

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7OYD|1|9|A|40
7OYD|1|9|G|41
*
7OYD|1|9|C|481
7OYD|1|9|G|482
7OYD|1|9|C|483
7OYD|1|9|A2M|484
7OYD|1|9|A|485
7OYD|1|9|A|486
7OYD|1|9|U|487
*
7OYD|1|9|A|512
7OYD|1|9|G|513
7OYD|1|9|U|514

Current chains

Chain 9

18S rRNA

Nearby chains

Chain JJ

Ribosomal protein S9 (Predicted)

Chain XX

RPS23

Chain v

EEF2