J3_7OYD_034
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7OYD|1|5|U|354, 7OYD|1|5|A|362, 7OYD|1|8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_034 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.057
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
7OYD|1|5|C|351
7OYD|1|5|G|352
7OYD|1|5|A|353
7OYD|1|5|U|354
7OYD|1|5|A|355
7OYD|1|5|G|356
7OYD|1|5|U|357
7OYD|1|5|C|358
7OYD|1|5|A|359
7OYD|1|5|A|360
7OYD|1|5|C|361
7OYD|1|5|A|362
7OYD|1|5|A|363
7OYD|1|5|G|364
7OYD|1|5|U|365
7OYD|1|5|A|366
7OYD|1|5|C|367
*
7OYD|1|5|G|374
7OYD|1|5|G|375
7OYD|1|5|A|376
7OYD|1|5|A|377
7OYD|1|5|A|378
7OYD|1|5|G|379
*
7OYD|1|8|C|21
7OYD|1|8|U|22
7OYD|1|8|C|23
7OYD|1|8|G|24
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Y
- Ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
- Chain s1
- Dap1b
Coloring options: