J3_7OYD_041
3D structure
- PDB id
- 7OYD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rabbit 80S ribosome with zebrafish Dap1b
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 7OYD|1|9|A|46
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7OYD_041 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0915
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7OYD|1|9|A|40
7OYD|1|9|G|41
7OYD|1|9|A|42
7OYD|1|9|U|43
7OYD|1|9|U|44
7OYD|1|9|A|45
7OYD|1|9|A|46
7OYD|1|9|G|47
*
7OYD|1|9|C|479
7OYD|1|9|G|480
7OYD|1|9|C|481
7OYD|1|9|G|482
7OYD|1|9|C|483
7OYD|1|9|A2M|484
7OYD|1|9|A|485
7OYD|1|9|A|486
7OYD|1|9|U|487
*
7OYD|1|9|A|512
7OYD|1|9|G|513
7OYD|1|9|U|514
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain JJ
- Ribosomal protein S9 (Predicted)
- Chain XX
- RPS23
- Chain v
- EEF2
Coloring options: