J3_7P48_017

3D structure

PDB id

7P48 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus ribosome in complex with Sal(B)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

7P48|1|a|U|880, 7P48|1|a|A|882

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7P48_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1376

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7P48|1|a|C|834
7P48|1|a|U|835
7P48|1|a|A|836
7P48|1|a|A|837
*
7P48|1|a|U|866
7P48|1|a|G|867
7P48|1|a|C|868
7P48|1|a|A|869
7P48|1|a|G|870
*
7P48|1|a|C|877
7P48|1|a|A|878
7P48|1|a|U|879
7P48|1|a|U|880
7P48|1|a|A|881
7P48|1|a|A|882
7P48|1|a|G|883

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8